Term | Definition |
AA_%ID | Percentage amino acid identity between query and reference |
C_score | Convergence of simulated structures |
C_sd | Error in C_score |
Code_Chain | Closest structural homologue in PDB (reference) database |
Confidence_category | Confidence in model (query) structure based on agreement between actual and predicted PFAM match status.
- HiConf: Match_status = exactMatch and Exact_match_prediction >= 0.5
- HiConf-like: Match_status = noMatch and Exact_match_prediction >= 0.5
- LowerConf: Match_status = noMatch and Exact_match_prediction < 0.5
- LowerConf-like: Match_status = exactMatch and Exact_match_prediction < 0.5
|
Cov | Three dimensional coverage of query structure relative to reference |
Exact_match_prediction | Likelihood of exactMatch between query and reference, output from random forest classifier |
Length_ratio | Ratio of query peptide AA length to reference peptide AA length |
Molecule | Description of PDB reference molecule |
RMSD | Root mean squared deviation in alpha carbon atoms between query and reference |
RMSD_model | Expected RMSD |
RMSD_model_sd | Error in RMSD_model |
Species | Species encoding reference structure |
SS_sd | Standard deviation of secondary structure proportions (lower indicates greater complexity) |
TM | Template modeling score - describes overall goodness of fit between query and reference structures
|
TM_model | Expected TM score |
TM_model_sd | Error in TM_model |